Here is a list of all class members with links to the classes they belong to:

- a -

• A : seq::Nucleotide, seq::AminoAcid
• AA_A : seq::AminoAcid
• AA_B : seq::AminoAcid
• AA_C : seq::AminoAcid
• AA_D : seq::AminoAcid
• AA_E : seq::AminoAcid
• AA_F : seq::AminoAcid
• AA_G : seq::AminoAcid
• AA_GAP : seq::AminoAcid
• AA_H : seq::AminoAcid
• AA_I : seq::AminoAcid
• AA_K : seq::AminoAcid
• AA_L : seq::AminoAcid
• AA_M : seq::AminoAcid
• AA_N : seq::AminoAcid
• AA_P : seq::AminoAcid
• AA_Q : seq::AminoAcid
• AA_R : seq::AminoAcid
• AA_S : seq::AminoAcid
• AA_STP : seq::AminoAcid
• AA_T : seq::AminoAcid
• AA_U : seq::AminoAcid
• AA_V : seq::AminoAcid
• AA_W : seq::AminoAcid
• AA_X : seq::AminoAcid
• AA_Y : seq::AminoAcid
• AA_Z : seq::AminoAcid
• AASequence() : seq::AASequence
• aaSequence() : seq::CodingSequence
• allAASequences() : seq::CodingSequence
• AminoAcid() : seq::AminoAcid
• asString() : seq::NTSequence, seq::AASequence

- b -

• B : seq::Nucleotide, seq::AminoAcid

- c -

• C : seq::Nucleotide, seq::AminoAcid
• changeNucleotide() : seq::CodingSequence
• CodingSequence() : seq::CodingSequence

- d -

• D : seq::Nucleotide, seq::AminoAcid
• description() : seq::NTSequence, seq::AASequence

- e -

• E : seq::AminoAcid

- f -

• F : seq::AminoAcid
• from() : seq::Mutation< Char >
• fromRep() : seq::Nucleotide, seq::AminoAcid

- g -

• G : seq::Nucleotide, seq::AminoAcid
• GAP : seq::Nucleotide, seq::AminoAcid
• getMu() : seq::NucleotideSubstitutionModel

- h -

• H : seq::Nucleotide, seq::AminoAcid

- i -

• I : seq::AminoAcid
• intRep() : seq::Nucleotide, seq::AminoAcid
• isAmbiguity() : seq::Nucleotide
• isSynonymousMutation() : seq::CodingSequence
• isValid() : seq::Mutation< Char >

- k -

• K : seq::Nucleotide, seq::AminoAcid

- l -

• L : seq::AminoAcid

- m -

• M : seq::Nucleotide, seq::AminoAcid
• message() : seq::ParseException
• Mutation() : seq::Mutation< Char >

- n -

• N : seq::Nucleotide, seq::AminoAcid
• name() : seq::NTSequence, seq::AASequence
• nonAmbiguousNucleotides() : seq::Nucleotide
• nonAmbiguousSequences() : seq::NTSequence
• NT_A : seq::Nucleotide
• NT_B : seq::Nucleotide
• NT_C : seq::Nucleotide
• NT_D : seq::Nucleotide
• NT_G : seq::Nucleotide
• NT_GAP : seq::Nucleotide
• NT_H : seq::Nucleotide
• NT_K : seq::Nucleotide
• NT_M : seq::Nucleotide
• NT_N : seq::Nucleotide
• NT_R : seq::Nucleotide
• NT_S : seq::Nucleotide
• NT_T : seq::Nucleotide
• NT_V : seq::Nucleotide
• NT_W : seq::Nucleotide
• NT_Y : seq::Nucleotide
• NTSequence() : seq::NTSequence
• ntSequence() : seq::CodingSequence
• Nucleotide() : seq::Nucleotide
• NucleotideSubstitutionModel() : seq::NucleotideSubstitutionModel

- o -

• operator!=() : seq::Nucleotide, seq::AminoAcid
• operator<() : seq::Nucleotide, seq::Mutation< Char >, seq::AminoAcid
• operator==() : seq::Nucleotide, seq::Mutation< Char >, seq::AminoAcid

- p -

• P : seq::AminoAcid
• ParseException() : seq::ParseException
• pos() : seq::Mutation< Char >
• print() : seq::NucleotideSubstitutionModel

- q -

• Q : seq::AminoAcid

- r -

• R : seq::Nucleotide, seq::AminoAcid
• reverse() : seq::Mutation< Char >

- s -

• S : seq::Nucleotide, seq::AminoAcid
• sampleAmbiguities() : seq::NTSequence
• sampleAmbiguity() : seq::Nucleotide
• setDescription() : seq::NTSequence, seq::AASequence
• setName() : seq::NTSequence, seq::AASequence
• STP : seq::AminoAcid

- t -

• T : seq::Nucleotide, seq::AminoAcid
• tla() : seq::AminoAcid
• to() : seq::Mutation< Char >
• toChar() : seq::Nucleotide, seq::AminoAcid
• translate() : seq::Codon, seq::AASequence
• translateAll() : seq::Codon

- u -

• U : seq::AminoAcid
• updateAASequence() : seq::CodingSequence

- v -

• V : seq::Nucleotide, seq::AminoAcid

- w -

• W : seq::Nucleotide, seq::AminoAcid
• whatIfMutation() : seq::CodingSequence

- x -

• X : seq::AminoAcid

- y -

• Y : seq::Nucleotide, seq::AminoAcid

- z -

• Z : seq::AminoAcid

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